PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938327.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 286aa    MW: 30972.5 Da    PI: 6.231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938327.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.1e-13217241226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ + + G+C+yG+rC+FaHg
  XP_010938327.1 217 KTELCNKWVEKGWCPYGERCQFAHG 241
                     8***********************8 PP

2zf-CCCH222.9e-07254278125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     ykt lCr  a +G C+yG rC+F H
  XP_010938327.1 254 YKTQLCRMLASGGDCPYGHRCHFRH 278
                     9**********************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.3E-17213248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-10214247IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.032215243IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10217241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-8249282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-12249278IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901253281IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5254278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEGEITLPAS QNSVAGTHTS CCSFEDGDES TGESAGWISG DRFEIQKHQI LRELQQMVNR  60
YNDCFRQLQA ALSDLDVLRH DNLQLNADHL HLTFLLEEME ASAAAAATAA GRESVPPEAQ  120
GKQKIVGGET ATEDPDPDPA PPGGSDGGGG KGGTRGGLPK SISIRSRGFL AVKQPPAGGD  180
VEARRPHRLR LPASAALKGE EGDGEVEVEA YSQGMAKTEL CNKWVEKGWC PYGERCQFAH  240
GIQELRPVIR HPRYKTQLCR MLASGGDCPY GHRCHFRHAL PSHRDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-22217278566Butyrate response factor 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938326.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 21
RefseqXP_010938327.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 21
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-41C3H family protein